If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 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'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ), 'gf_id' => 'HOM05D000685', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000685' ), 'data_identifier' => 'HOM05D000685', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000685', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '834', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p25090' => 'bna', 'A03p26890' => 'bna', 'A04p33680' => 'bna', 'A06p05460' => 'bna', 'A07p13900' => 'bna', 'A07p23790' => 'bna', 'A07p35530' => 'bna', 'A08p35130' => 'bna', 'A09p00700' => 'bna', 'A09p41200' => 'bna', 'A09p65880' => 'bna', 'Aa31LG1G26740' => 'aar', 'Aa31LG2G250' => 'aar', 'Aa31LG4G11850' => 'aar', 'Aa31LG5G9130' => 'aar', 'Aa31LG7G7450' => 'aar', 'Aa31sc703G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2072' => 'aag', 'Actinidia05186' => 'ach', 'Actinidia11675' => 'ach', 'Actinidia12196' => 'ach', 'Actinidia13398' => 'ach', 'Actinidia13497' => 'ach', 'Actinidia16148' => 'ach', 'Actinidia18713' => 'ach', 'Actinidia21974' => 'ach', 'Actinidia27211' => 'ach', 'Actinidia27447' => 'ach', 'Actinidia37055' => 'ach', 'Actinidia40483' => 'ach', 'Ah.02g126780' => 'amhyb', 'Ah.05g174790' => 'amhyb', 'Ah.09g225280' => 'amhyb', 'Ah.09g227410' => 'amhyb', 'AL1G18890' => 'aly', 'AL1G37210' => 'aly', 'AL2G28270' => 'aly', 'AL4G19550' => 'aly', 'AL4G44310' => 'aly', 'AL6G53320' => 'aly', 'Aqoxy1G00610' => 'aox', 'Aqoxy3G00537' => 'aox', 'Aqoxy3G02889' => 'aox', 'Aqoxy7G00718' => 'aox', 'Aqoxy7G03677' => 'aox', 'arahy.Tifrunner.gnm1.ann1.20NM7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32YMTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3KF6RP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3P44EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.69GKHF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ1GLD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CZ7D1D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F6I3SQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNKT0B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GE3GK9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H309J3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IPJH2T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K25LU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KKAN03' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R7E7C4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7IKXG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X90Z8E' => 'arhy', 'AT1G08465' => 'ath', 'AT1G23420' => 'ath', 'AT1G69180' => 'ath', 'AT2G26580' => 'ath', 'AT2G45190' => 'ath', 'AT4G00180' => 'ath', 'ATR0697G223' => 'atr', 'ATR0827G016' => 'atr', 'ATR1091G097' => 'atr', 'ATR1120G104' => 'atr', 'ATR1152G046' => 'atr', 'Atru.chr11.1594' => 'acertr', 'Atru.chr11.2062' => 'acertr', 'Atru.chr3.3073' => 'acertr', 'Atru.chr5.269' => 'acertr', 'Atru.chr7.1132' => 'acertr', 'Atru.chr9.1387' => 'acertr', 'AUR62001574' => 'cqu', 'AUR62003076' => 'cqu', 'AUR62004175' => 'cqu', 'AUR62007472' => 'cqu', 'AUR62007891' => 'cqu', 'AUR62011149' => 'cqu', 'AUR62013338' => 'cqu', 'AUR62013674' => 'cqu', 'AUR62020210' => 'cqu', 'AUR62039930' => 'cqu', 'AUR62043760' => 'cqu', 'BcaB01g02223' => 'bca', 'BcaB01g03026' => 'bca', 'BcaB01g03283' => 'bca', 'BcaB02g07563' => 'bca', 'BcaB03g13331' => 'bca', 'BcaB03g15878' => 'bca', 'BcaB07g34090' => 'bca', 'BcaC01g05151' => 'bca', 'BcaC04g24197' => 'bca', 'BcaC05g26261' => 'bca', 'BcaC06g35036' => 'bca', 'BcaC07g38393' => 'bca', 'BcaC07g41943' => 'bca', 'BcaC08g44883' => 'bca', 'BolC3t15340H' => 'bol', 'BolC3t15566H' => 'bol', 'BolC4t28650H' => 'bol', 'BolC5t29417H' => 'bol', 'BolC5t30970H' => 'bol', 'BolC6t37651H' => 'bol', 'BolC6t39360H' => 'bol', 'BolC7t42568H' => 'bol', 'BolC8t48831H' => 'bol', 'BolC8t52528H' => 'bol', 'BolC9t52950H' => 'bol', 'BraA03t11711Z' => 'bra', 'BraA03t11900Z' => 'bra', 'BraA04t18831Z' => 'bra', 'BraA06t23754Z' => 'bra', 'BraA07t29143Z' => 'bra', 'BraA07t30030Z' => 'bra', 'BraA07t31141Z' => 'bra', 'BraA08t35422Z' => 'bra', 'BraA09t35690Z' => 'bra', 'BraA09t39616Z' => 'bra', 'BraA09t41932Z' => 'bra', 'C03p29930' => 'bna', 'C03p32240' => 'bna', 'C05p06570' => 'bna', 'C05p22720' => 'bna', 'C06p24990' => 'bna', 'C06p40720' => 'bna', 'C07p20450' => 'bna', 'C08p11510' => 'bna', 'C08p49980' => 'bna', 'C09p00150' => 'bna', 'CAN.G1217.20' => 'can', 'CAN.G1463.16' => 'can', 'CAN.G1469.4' => 'can', 'CAN.G434.1' => 'can', 'CAN.G551.84' => 'can', 'CAN.G601.7' => 'can', 'CAN.G707.25' => 'can', 'CANSAT01G1163' => 'cansat', 'CANSAT11G0792' => 'cansat', 'CANSAT21G1998' => 'cansat', 'CANSAT56G0250' => 'cansat', 'CANSAT56G0903' => 'cansat', 'CANSAT64G1232' => 'cansat', 'CARHR008350' => 'chi', 'CARHR023860' => 'chi', 'CARHR062050' => 'chi', 'CARHR118520' => 'chi', 'CARHR140410' => 'chi', 'CARHR248230' => 'chi', 'Carub.0001s0782' => 'cru', 'Carub.0001s2300' => 'cru', 'Carub.0002s1578' => 'cru', 'Carub.0004s0684' => 'cru', 'Carub.0004s2781' => 'cru', 'Carub.0006s3704' => 'cru', 'Ca_01623_v3' => 'car', 'Ca_03142_v3' => 'car', 'Ca_05029_v3' => 'car', 'Ca_06923_v3' => 'car', 'Ca_12300_v3' => 'car', 'Ca_19356_v3' => 'car', 'Ca_22665_v3' => 'car', 'Cc00_g13830' => 'ccan', 'Cc01_g07860' => 'ccan', 'Cc06_g08310' => 'ccan', 'Cc08_g12950' => 'ccan', 'Cc11_g11750' => 'ccan', 'Cc11_g15350' => 'ccan', 'CDE02G3076' => 'cde', 'CDE02G4196' => 'cde', 'CDE02G4683' => 'cde', 'CDE04G1255' => 'cde', 'CDE04G2010' => 'cde', 'CDE07G0294' => 'cde', 'CDE07G0500' => 'cde', 'CDE07G0788' => 'cde', 'CDE07G1932' => 'cde', 'CDE08G1032' => 'cde', 'CDE11G0440' => 'cde', 'CDE12G0062' => 'cde', 'CDE12G0751' => 'cde', 'Cfa003392' => 'cfa', 'Cfa009176' => 'cfa', 'Cfa010210' => 'cfa', 'Cfa011189' => 'cfa', 'Cfa012776' => 'cfa', 'Ciclev10009560m.g' => 'ccl', 'Ciclev10021834m.g' => 'ccl', 'Ciclev10022170m.g' => 'ccl', 'Ciclev10029354m.g' => 'ccl', 'Ciclev10033714m.g' => 'ccl', 'Ciclev10033770m.g' => 'ccl', 'CiPaw.03G245700' => 'cil', 'CiPaw.04G172600' => 'cil', 'CiPaw.05G123300' => 'cil', 'CiPaw.05G186200' => 'cil', 'CiPaw.11G150100' => 'cil', 'CiPaw.12G106500' => 'cil', 'CiPaw.13G033800' => 'cil', 'CiPaw.13G126700' => 'cil', 'CiPaw.14G026600' => 'cil', 'CiPaw.14G092400' => 'cil', 'ClCG01G003810' => 'cla', 'ClCG02G022510' => 'cla', 'ClCG05G023780' => 'cla', 'ClCG05G025460' => 'cla', 'ClCG06G011300' => 'cla', 'ClCG08G017890' => 'cla', 'ClCG10G003000' => 'cla', 'ClCG11G003140' => 'cla', 'COL.COLO4_12512' => 'col', 'COL.COLO4_17537' => 'col', 'COL.COLO4_24210' => 'col', 'COL.COLO4_25359' => 'col', 'COL.COLO4_27848' => 'col', 'COL.COLO4_35102' => 'col', 'COL.COLO4_37220' => 'col', 'Cpa.g.c30608' => 'cpa', 'Cpa.g.sc103.34' => 'cpa', 'Cpa.g.sc104.5' => 'cpa', 'Cpa.g.sc145.3' => 'cpa', 'Cpa.g.sc29.121' => 'cpa', 'Cpa.g.sc46.14' => 'cpa', 'Cpa.g.sc69.72' => 'cpa', 'Cpa.g.sc77.16' => 'cpa', 'CsaV3_1G030340' => 'csa', 'CsaV3_2G002960' => 'csa', 'CsaV3_3G003040' => 'csa', 'CsaV3_5G003950' => 'csa', 'CsaV3_5G031440' => 'csa', 'CsaV3_5G033400' => 'csa', 'CsaV3_6G038650' => 'csa', 'CSS0002505' => 'camsi', 'CSS0003483' => 'camsi', 'CSS0004765' => 'camsi', 'CSS0005920' => 'camsi', 'CSS0017314' => 'camsi', 'CSS0021771' => 'camsi', 'CSS0025014' => 'camsi', 'CSS0034551' => 'camsi', 'CSS0035563' => 'camsi', 'CSS0039309' => 'camsi', 'CSS0048202' => 'camsi', 'DCAR_004921' => 'dca', 'DCAR_006190' => 'dca', 'DCAR_007074' => 'dca', 'DCAR_008464' => 'dca', 'DCAR_008543' => 'dca', 'DCAR_012254' => 'dca', 'DCAR_014892' => 'dca', 'DCAR_026683' => 'dca', 'DCAR_027801' => 'dca', 'DCAR_030050' => 'dca', 'DCAR_031517' => 'dca', 'Dinv15272' => 'din', 'Dinv18858' => 'din', 'Dinv21597' => 'din', 'Dinv33563' => 'din', 'Dinv33564' => 'din', 'Dinv36507' => 'din', 'Dinv39101' => 'din', 'Dinv40461' => 'din', 'Dinv41495' => 'din', 'Dinv43682' => 'din', 'Dinv44133' => 'din', 'Duzib068G0537' => 'dzi', 'Duzib084G0322' => 'dzi', 'Duzib119G0003' => 'dzi', 'Duzib133G1373' => 'dzi', 'Duzib138G1273' => 'dzi', 'Duzib150G0045' => 'dzi', 'Duzib150G1224' => 'dzi', 'Duzib168G1768' => 'dzi', 'Duzib168G1929' => 'dzi', 'Duzib170G0787' => 'dzi', 'Duzib187G1407' => 'dzi', 'Duzib205G0773' => 'dzi', 'Duzib213G0944' => 'dzi', 'Duzib251G0001' => 'dzi', 'Duzib251G0960' => 'dzi', 'Duzib268G1366' => 'dzi', 'Duzib268G1577' => 'dzi', 'ECA233G4171' => 'eca', 'ECA234G3391' => 'eca', 'ECA236G3845' => 'eca', 'ECA240G2529' => 'eca', 'ECA246G3759' => 'eca', 'ECA246G4000' => 'eca', 'EL10Ac1g00847' => 'bvu', 'EL10Ac5g13007' => 'bvu', 'EL10Ac6g13704' => 'bvu', 'EL10Ac6g15025' => 'bvu', 'EL10Ac7g16274' => 'bvu', 'EL10Ac8g18683' => 'bvu', 'Eucgr.B03140' => 'egr', 'Eucgr.B03310' => 'egr', 'Eucgr.C01515' => 'egr', 'Eucgr.D02474' => 'egr', 'Eucgr.E01474' => 'egr', 'Eucgr.J00587' => 'egr', 'FAN01G2063' => 'fan', 'FAN03G3331' => 'fan', 'FAN03G3390' => 'fan', 'FAN04G1852' => 'fan', 'FAN06G1946' => 'fan', 'FAN06G2636' => 'fan', 'FAN07G1619' => 'fan', 'FAN08G0899' => 'fan', 'FAN10G0707' => 'fan', 'FAN11G3428' => 'fan', 'FAN12G1546' => 'fan', 'FAN13G1746' => 'fan', 'FAN16G1440' => 'fan', 'FAN17G1188' => 'fan', 'FAN18G4163' => 'fan', 'FAN21G3533' => 'fan', 'FAN22G0463' => 'fan', 'FAN23G0847' => 'fan', 'FAN25G1342' => 'fan', 'FAN26G3230' => 'fan', 'FAN28G1224' => 'fan', 'FvH4_1g03040' => 'fve', 'FvH4_3g26130' => 'fve', 'FvH4_4g32910' => 'fve', 'FvH4_5g00320' => 'fve', 'FvH4_7g11260' => 'fve', 'Glyma.01G029300' => 'gma', 'Glyma.01G063500' => 'gma', 'Glyma.01G137200' => 'gma', 'Glyma.02G121100' => 'gma', 'Glyma.03G029800' => 'gma', 'Glyma.04G094800' => 'gma', 'Glyma.05G056000' => 'gma', 'Glyma.06G096500' => 'gma', 'Glyma.06G308900' => 'gma', 'Glyma.08G285200' => 'gma', 'Glyma.12G096000' => 'gma', 'Glyma.12G190500' => 'gma', 'Glyma.13G157800' => 'gma', 'Glyma.13G311200' => 'gma', 'Glyma.17G113400' => 'gma', 'Glyma.17G138200' => 'gma', 'Glyma.18G140400' => 'gma', 'Gohir.A01G053900' => 'ghi', 'Gohir.A01G162500' => 'ghi', 'Gohir.A03G105600' => 'ghi', 'Gohir.A04G042500' => 'ghi', 'Gohir.A05G015400' => 'ghi', 'Gohir.A06G054900' => 'ghi', 'Gohir.A07G036400' => 'ghi', 'Gohir.A07G114400' => 'ghi', 'Gohir.A07G146700' => 'ghi', 'Gohir.A09G101000' => 'ghi', 'Gohir.A11G079400' => 'ghi', 'Gohir.A12G218400' => 'ghi', 'Gohir.D01G042714' => 'ghi', 'Gohir.D01G149800' => 'ghi', 'Gohir.D02G130900' => 'ghi', 'Gohir.D05G016500' => 'ghi', 'Gohir.D05G340700' => 'ghi', 'Gohir.D06G053701' => 'ghi', 'Gohir.D07G040400' => 'ghi', 'Gohir.D07G118000' => 'ghi', 'Gohir.D07G152700' => 'ghi', 'Gohir.D09G100400' => 'ghi', 'Gohir.D11G084100' => 'ghi', 'Gohir.D12G220700' => 'ghi', 'Gorai.001G042700' => 'gra', 'Gorai.001G127000' => 'gra', 'Gorai.001G174800' => 'gra', 'Gorai.002G054200' => 'gra', 'Gorai.002G185900' => 'gra', 'Gorai.005G146700' => 'gra', 'Gorai.006G117800' => 'gra', 'Gorai.007G089700' => 'gra', 'Gorai.008G236500' => 'gra', 'Gorai.009G016700' => 'gra', 'Gorai.009G367100' => 'gra', 'Gorai.010G062900' => 'gra', 'GSVIVG01001269001' => 'vvi', 'GSVIVG01012246001' => 'vvi', 'GSVIVG01013778001' => 'vvi', 'GSVIVG01015567001' => 'vvi', 'GSVIVG01022586001' => 'vvi', 'GSVIVG01027648001' => 'vvi', 'GSVIVG01037533001' => 'vvi', 'HanXRQChr03g0067451' => 'han', 'HanXRQChr04g0122691' => 'han', 'HanXRQChr05g0139121' => 'han', 'HanXRQChr06g0164191' => 'han', 'HanXRQChr06g0169631' => 'han', 'HanXRQChr10g0315651' => 'han', 'HanXRQChr12g0356171' => 'han', 'HanXRQChr12g0375091' => 'han', 'HanXRQChr13g0395021' => 'han', 'HanXRQChr13g0423101' => 'han', 'HanXRQChr14g0446751' => 'han', 'HanXRQChr15g0476711' => 'han', 'HanXRQChr17g0539491' => 'han', 'HanXRQChr17g0549371' => 'han', 'Haze_02659' => 'cav', 'Haze_07846' => 'cav', 'Haze_11878' => 'cav', 'Haze_12210' => 'cav', 'Haze_23596' => 'cav', 'Haze_25557' => 'cav', 'Hma1.2p1_0018F.1_g012260' => 'hma', 'Hma1.2p1_0101F.1_g049680' => 'hma', 'Hma1.2p1_0223F.1_g094360' => 'hma', 'Hma1.2p1_0566F.1_g180000' => 'hma', 'Hma1.2p1_1691F.1_g297780' => 'hma', 'Hma1.2p1_2519F.1_g323800' => 'hma', 'HPP92_001304' => 'vpl', 'HPP92_001306' => 'vpl', 'HPP92_007843' => 'vpl', 'HPP92_012156' => 'vpl', 'HPP92_014471' => 'vpl', 'HPP92_014475' => 'vpl', 'HPP92_021255' => 'vpl', 'HPP92_025572' => 'vpl', 'HPP92_025586' => 'vpl', 'HPP92_025620' => 'vpl', 'HPP92_026329' => 'vpl', 'Hund09259' => 'sun', 'Hund11578' => 'sun', 'Hund14607' => 'sun', 'Hund17040' => 'sun', 'Hund17041' => 'sun', 'Hund18805' => 'sun', 'Hund20958' => 'sun', 'Lalb_Chr03g0028531' => 'lal', 'Lalb_Chr05g0216751' => 'lal', 'Lalb_Chr05g0225511' => 'lal', 'Lalb_Chr05g0225521' => 'lal', 'Lalb_Chr07g0179071' => 'lal', 'Lalb_Chr07g0190131' => 'lal', 'Lalb_Chr10g0099051' => 'lal', 'Lalb_Chr12g0198001' => 'lal', 'Lalb_Chr12g0208071' => 'lal', 'Lalb_Chr12g0208081' => 'lal', 'Lalb_Chr14g0375921' => 'lal', 'Lalb_Chr16g0382171' => 'lal', 'Lalb_Chr16g0389501' => 'lal', 'Lalb_Chr17g0341351' => 'lal', 'Lalb_Chr19g0136141' => 'lal', 'Lalb_Chr24g0393311' => 'lal', 'Lj1A254G19' => 'lonja', 'Lj1A271T7' => 'lonja', 'Lj2C211G2' => 'lonja', 'Lj2g0004613' => 'lja', 'Lj2g0026083' => 'lja', 'Lj3g0013187' => 'lja', 'Lj3g0013544' => 'lja', 'Lj3g0013769' => 'lja', 'Lj4g0019368' => 'lja', 'Lj4g0021016' => 'lja', 'Lj6A777G36' => 'lonja', 'Lj7P532T32' => 'lonja', 'Lj7P533T16' => 'lonja', 'Lj9A567T72' => 'lonja', 'Lsat_1_v5_gn_0_27800' => 'lsa', 'Lsat_1_v5_gn_3_128981' => 'lsa', 'Lsat_1_v5_gn_3_3040' => 'lsa', 'Lsat_1_v5_gn_3_53601' => 'lsa', 'Lsat_1_v5_gn_5_94941' => 'lsa', 'Lsat_1_v5_gn_6_2400' => 'lsa', 'Lsat_1_v5_gn_7_43360' => 'lsa', 'Lsat_1_v5_gn_7_9041' => 'lsa', 'Lsat_1_v5_gn_8_58340' => 'lsa', 'Manes.01G026100' => 'mes', 'Manes.01G076300' => 'mes', 'Manes.01G268100' => 'mes', 'Manes.02G035700' => 'mes', 'Manes.04G064600' => 'mes', 'Manes.05G048000' => 'mes', 'Manes.05G111000' => 'mes', 'Manes.06G057200' => 'mes', 'Manes.08G035700' => 'mes', 'Manes.11G103500' => 'mes', 'Manes.12G026501' => 'mes', 'Manes.13G028200' => 'mes', 'Manes.14G133600' => 'mes', 'MBI01_g02777_MAGBIO' => 'mbi', 'MBI04_g11435_MAGBIO' => 'mbi', 'MBI16_g37495_MAGBIO' => 'mbi', 'MBI16_g37497_MAGBIO' => 'mbi', 'MBI19_g06117_MAGBIO' => 'mbi', 'MCO11G530' => 'mco', 'MD00G1189200' => 'mdo', 'MD02G1029700' => 'mdo', 'MD03G1159800' => 'mdo', 'MD04G1083800' => 'mdo', 'MD06G1065700' => 'mdo', 'MD07G1117200' => 'mdo', 'MD13G1059600' => 'mdo', 'MD13G1094900' => 'mdo', 'MD15G1171100' => 'mdo', 'MD16G1058900' => 'mdo', 'MD16G1096000' => 'mdo', 'Medtr2g087740' => 'mtr', 'Medtr4g025900' => 'mtr', 'Medtr4g050300' => 'mtr', 'Medtr4g101660' => 'mtr', 'Medtr4g114730' => 'mtr', 'Medtr5g034030' => 'mtr', 'Medtr5g046230' => 'mtr', 'MELO3C000087.2' => 'cme', 'MELO3C004493.2' => 'cme', 'MELO3C010330.2' => 'cme', 'MELO3C014527.2' => 'cme', 'MELO3C032275.2' => 'cme', 'MELO3C034075.2' => 'cme', 'MELO3C034130.2' => 'cme', 'Migut.B01607' => 'egut', 'Migut.D02379' => 'egut', 'Migut.E00040' => 'egut', 'Migut.K00443' => 'egut', 'Migut.L01172' => 'egut', 'Migut.L01462' => 'egut', 'Migut.N01619' => 'egut', 'Migut.N02436' => 'egut', 'MSTRG.12399' => 'ama', 'MSTRG.17168' => 'ama', 'MSTRG.17672' => 'ama', 'MSTRG.18798' => 'ama', 'MSTRG.20732' => 'ama', 'MSTRG.21006' => 'ama', 'MSTRG.2299' => 'ama', 'MSTRG.28183' => 'ama', 'MSTRG.7734' => 'ama', 'Nitab4.5_0000027g0040' => 'nta', 'Nitab4.5_0000028g0220' => 'nta', 'Nitab4.5_0000203g0270' => 'nta', 'Nitab4.5_0000509g0020' => 'nta', 'Nitab4.5_0000859g0350' => 'nta', 'Nitab4.5_0000875g0100' => 'nta', 'Nitab4.5_0000993g0120' => 'nta', 'Nitab4.5_0001118g0080' => 'nta', 'Nitab4.5_0001349g0100' => 'nta', 'Nitab4.5_0001873g0060' => 'nta', 'Nitab4.5_0001957g0060' => 'nta', 'Nitab4.5_0003032g0030' => 'nta', 'Nitab4.5_0004782g0010' => 'nta', 'Nitab4.5_0006268g0040' => 'nta', 'Nitab4.5_0006319g0040' => 'nta', 'Nitab4.5_0006445g0020' => 'nta', 'Nitab4.5_0008788g0010' => 'nta', 'Nn114s43374' => 'nnu', 'Nn1g01088' => 'nnu', 'Nn2g12065' => 'nnu', 'Nn2g14381' => 'nnu', 'Nn3g17510' => 'nnu', 'Nn4g23498' => 'nnu', 'Nn6g34046' => 'nnu', 'Nn6g34616' => 'nnu', 'Nn8g39484' => 'nnu', 'Oeu003474.2' => 'oeu', 'Oeu005814.1' => 'oeu', 'Oeu031003.1' => 'oeu', 'Oeu033104.1' => 'oeu', 'Oeu043814.1' => 'oeu', 'Oeu048822.1' => 'oeu', 'Oeu055459.1' => 'oeu', 'Oeu058191.1' => 'oeu', 'Os02g0643200' => 'osa', 'Os03g0215200' => 'osa', 'Os03g0650000' => 'osa', 'Os04g0536300' => 'osa', 'Os07g0160100' => 'osa', 'Os07g0571800' => 'osa', 'Os10g0508300' => 'osa', 'Os12g0621100' => 'osa', 'Peaxi162Scf00002g00717' => 'pax', 'Peaxi162Scf00013g02410' => 'pax', 'Peaxi162Scf00026g00144' => 'pax', 'Peaxi162Scf00046g00823' => 'pax', 'Peaxi162Scf00098g00134' => 'pax', 'Peaxi162Scf00175g00528' => 'pax', 'Peaxi162Scf00313g00092' => 'pax', 'Peaxi162Scf00710g00529' => 'pax', 'Peaxi162Scf00717g00318' => 'pax', 'PGR004G0573' => 'pgr', 'PGR042G0342' => 'pgr', 'PGR102G1060' => 'pgr', 'PGR102G2253' => 'pgr', 'PGR119G1118' => 'pgr', 'PGR142G0539' => 'pgr', 'PGSC0003DMG400002883' => 'stu', 'PGSC0003DMG400002988' => 'stu', 'PGSC0003DMG400004741' => 'stu', 'PGSC0003DMG400005936' => 'stu', 'PGSC0003DMG400025969' => 'stu', 'PGSC0003DMG400028360' => 'stu', 'PGSC0003DMG400030904' => 'stu', 'Phvul.002G069700' => 'pvu', 'Phvul.003G039800' => 'pvu', 'Phvul.003G061800' => 'pvu', 'Phvul.003G166100' => 'pvu', 'Phvul.003G217700' => 'pvu', 'Phvul.005G117600' => 'pvu', 'Phvul.010G079200' => 'pvu', 'Phvul.011G100300' => 'pvu', 'Potri.001G120200' => 'ptr', 'Potri.001G214700' => 'ptr', 'Potri.002G145100' => 'ptr', 'Potri.003G112800' => 'ptr', 'Potri.006G067800' => 'ptr', 'Potri.008G097800' => 'ptr', 'Potri.008G189000' => 'ptr', 'Potri.009G000100' => 'ptr', 'Potri.010G042400' => 'ptr', 'Potri.010G154350' => 'ptr', 'Potri.014G066700' => 'ptr', 'Potri.016G067300' => 'ptr', 'Potri.018G129800' => 'ptr', 'Prupe.1G250500' => 'ppe', 'Prupe.1G290100' => 'ppe', 'Prupe.2G140400' => 'ppe', 'Prupe.5G075800' => 'ppe', 'Prupe.6G147600' => 'ppe', 'Prupe.7G245200' => 'ppe', 'Psat2g104480' => 'psa', 'Psat2g105360' => 'psa', 'Psat2g133600' => 'psa', 'Psat4g037440' => 'psa', 'Psat4g071280' => 'psa', 'Psat5g262680' => 'psa', 'Psat7g204080' => 'psa', 'Psat7g238960' => 'psa', 'PSO017G4021' => 'pso', 'PSO017G6003' => 'pso', 'PSO017G7294' => 'pso', 'PSO063G2331' => 'pso', 'PSO063G7001' => 'pso', 'PSO170G0857' => 'pso', 'PSO210G2021' => 'pso', 'PSO210G3213' => 'pso', 'PSO238G0007' => 'pso', 'PSO478G1916' => 'pso', 'PSO478G2807' => 'pso', 'PSO832G0324' => 'pso', 'QL01p019166' => 'qlo', 'QL02p088864' => 'qlo', 'QL03p059337' => 'qlo', 'QL03p073545' => 'qlo', 'QL04p039416' => 'qlo', 'QL12p013951' => 'qlo', 'RcHm_v2.0_Chr1g0349391' => 'rch', 'RcHm_v2.0_Chr2g0088171' => 'rch', 'RcHm_v2.0_Chr4g0437891' => 'rch', 'RcHm_v2.0_Chr4g0441941' => 'rch', 'RcHm_v2.0_Chr5g0049141' => 'rch', 'RcHm_v2.0_Chr7g0202251' => 'rch', 'Rhsim01G0067900' => 'rsi', 'Rhsim01G0199400' => 'rsi', 'Rhsim07G0104100' => 'rsi', 'Rhsim12G0073800' => 'rsi', 'Rhsim12G0114400' => 'rsi', 'Rhsim12G0114500' => 'rsi', 'Sabra01G0092600' => 'sbr', 'Sabra02G0113000' => 'sbr', 'Sabra03G0078100' => 'sbr', 'Sabra06G0050500' => 'sbr', 'Sabra08G0143600' => 'sbr', 'Sabra09G0000800' => 'sbr', 'Sabra10G0025000' => 'sbr', 'Sabra14G0046800' => 'sbr', 'Sabra16G0128500' => 'sbr', 'Sabra18G0110300' => 'sbr', 'SalBow1G4135' => 'sbo', 'SalBow2G1741' => 'sbo', 'SalBow3G2931' => 'sbo', 'SalBow5G1571' => 'sbo', 'SalBow5G5709' => 'sbo', 'SalBow6G6526' => 'sbo', 'SalBow6G7182' => 'sbo', 'Sc04g0007450' => 'sci', 'Sc07g0009390' => 'sci', 'Sc08g0006500' => 'sci', 'Sc12g0000390' => 'sci', 'Sc14g0008670' => 'sci', 'Sc18g0000490' => 'sci', 'Sc22g0000690' => 'sci', 'Sc23g0003750' => 'sci', 'Sed0005272' => 'sed', 'Sed0007972' => 'sed', 'Sed0008223' => 'sed', 'Sed0009177' => 'sed', 'Sed0009422' => 'sed', 'Sed0012258' => 'sed', 'Sed0013376' => 'sed', 'Sed0016201' => 'sed', 'Sed0016572' => 'sed', 'Sed0023872' => 'sed', 'Sed0024139' => 'sed', 'Sed0024617' => 'sed', 'SEGI_10231' => 'sgi', 'SEGI_14550' => 'sgi', 'SEGI_22233' => 'sgi', 'SEGI_37224' => 'sgi', 'SGA_v2.0_scaffold113G31768' => 'sas', 'SGA_v2.0_scaffold153G36980' => 'sas', 'SGA_v2.0_scaffold165G38227' => 'sas', 'SGA_v2.0_scaffold16G07521' => 'sas', 'SGA_v2.0_scaffold16G07817' => 'sas', 'SGA_v2.0_scaffold394G50718' => 'sas', 'SGA_v2.0_scaffold43G16505' => 'sas', 'SGA_v2.0_scaffold7G04008' => 'sas', 'SHI03361' => 'shi', 'SHI13548' => 'shi', 'SHI15737' => 'shi', 'SHI17724' => 'shi', 'Solyc01g010240.3' => 'sly', 'Solyc01g091010.3' => 'sly', 'Solyc05g005240.2' => 'sly', 'Solyc05g012050.4' => 'sly', 'Solyc06g073920.3' => 'sly', 'Solyc07g008180.4' => 'sly', 'Solyc08g079100.3' => 'sly', 'Solyc11g071810.2' => 'sly', 'Solyc12g009580.2' => 'sly', 'Sopen01g005850' => 'spe', 'Sopen01g036740' => 'spe', 'Sopen05g001250' => 'spe', 'Sopen05g006840' => 'spe', 'Sopen06g030320' => 'spe', 'Sopen07g004060' => 'spe', 'Sopen08g027560' => 'spe', 'Sopen11g029480' => 'spe', 'Sopen12g004560' => 'spe', 'Sp1g07110' => 'spa', 'Sp1g20860' => 'spa', 'Sp4g09290' => 'spa', 'Sp4g27240' => 'spa', 'Sp5g24230' => 'spa', 'Sp6g00240' => 'spa', 'SpUn0031_0080' => 'spa', 'TAR375G0695' => 'tar', 'TAR383G0724' => 'tar', 'TAR622G0277' => 'tar', 'TAR623G0158' => 'tar', 'TAR625G0653' => 'tar', 'TAR626G0911' => 'tar', 'TAR629G0083' => 'tar', 'TAR629G1806' => 'tar', 'TAR636G1370' => 'tar', 'THA.LOC104798854' => 'tha', 'THA.LOC104800504' => 'tha', 'THA.LOC104802460' => 'tha', 'THA.LOC104803162' => 'tha', 'THA.LOC104808979' => 'tha', 'THA.LOC104809005' => 'tha', 'THA.LOC104809456' => 'tha', 'THA.LOC104817012' => 'tha', 'THA.LOC104817227' => 'tha', 'THA.LOC104818500' => 'tha', 'THA.LOC104820479' => 'tha', 'THA.LOC104821998' => 'tha', 'THA.LOC104823086' => 'tha', 'THA.LOC104826448' => 'tha', 'THA.LOC104826547' => 'tha', 'Thecc.01G380200' => 'tca', 'Thecc.02G254000' => 'tca', 'Thecc.02G326600' => 'tca', 'Thecc.03G257400' => 'tca', 'Thecc.07G117600' => 'tca', 'Thecc.09G128600' => 'tca', 'Thecc.09G267900' => 'tca', 'Thhalv10001617m.g' => 'esa', 'Thhalv10008669m.g' => 'esa', 'Thhalv10008858m.g' => 'esa', 'Thhalv10017320m.g' => 'esa', 'Thhalv10019126m.g' => 'esa', 'Thhalv10028925m.g' => 'esa', 'TPR.G21090' => 'tpr', 'TPR.G26495' => 'tpr', 'TPR.G37676' => 'tpr', 'TPR.G38485' => 'tpr', 'TPR.G4209' => 'tpr', 'TPR.G4635' => 'tpr', 'TPR.G4969' => 'tpr', 'TWI14G0630' => 'twi', 'TWI15G0879' => 'twi', 'TWI15G0973' => 'twi', 'TWI23G1031' => 'twi', 'TWI31G0473' => 'twi', 'TWI31G1332' => 'twi', 'TWI34G2027' => 'twi', 'TWI60G0858' => 'twi', 'TWI63G1424' => 'twi', 'TWI75G1201' => 'twi', 'unitig_0.g2762' => 'ugi', 'unitig_22.g6707' => 'ugi', 'unitig_22.g6940' => 'ugi', 'unitig_26.g8895' => 'ugi', 'unitig_26.g9420' => 'ugi', 'unitig_699.g19907' => 'ugi', 'unitig_749.g13603' => 'ugi', 'unitig_749.g13777' => 'ugi', 'unitig_76.g29081' => 'ugi', 'unitig_8.g3329' => 'ugi', 'vmacro01310' => 'vma', 'vmacro13431' => 'vma', 'vmacro14108' => 'vma', 'vmacro16223' => 'vma', 'vmacro16226' => 'vma', 'vmacro20572' => 'vma', 'VMungo0251G3338' => 'vmu', 'VMungo0251G3696' => 'vmu', 'VMungo0331G1381' => 'vmu', 'VMungo0464G0410' => 'vmu', 'VMungo1080G1013' => 'vmu', 'VMungo1127G2006' => 'vmu', 'VMungo1215G0563' => 'vmu', 'VMungo1215G0803' => 'vmu', 'VMungo1215G2676' => 'vmu', 'Zm00001eb008680' => 'zma', 'Zm00001eb032110' => 'zma', 'Zm00001eb043940' => 'zma', 'Zm00001eb075520' => 'zma', 'Zm00001eb134520' => 'zma', 'Zm00001eb218500' => 'zma', 'Zm00001eb220660' => 'zma', 'Zm00001eb248640' => 'zma', 'Zm00001eb300360' => 'zma', 'Zm00001eb324980' => 'zma', 'Zm00001eb400130' => 'zma', 'Zm00001eb427470' => 'zma' ) $gf_id = 'HOM05D000685' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000685' ) $data_identifier = 'HOM05D000685' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 17, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 11, 'bca' => (int) 14, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 13, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 8, 'csa' => (int) 7, 'camsi' => (int) 11, 'dca' => (int) 11, 'din' => (int) 11, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 21, 'fve' => (int) 5, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 14, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 11, 'sun' => (int) 7, 'lal' => (int) 16, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 13, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 9, 'nta' => (int) 17, 'nnu' => (int) 9, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 6, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 13, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 10, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 12, 'sgi' => (int) 4, 'sas' => (int) 8, 'shi' => (int) 4, 'sly' => (int) 9, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 15, 'tca' => (int) 7, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 10, 'vma' => (int) 6, 'vmu' => (int) 9, 'zma' => (int) 12 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427470' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1